PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G106500.1.p
Common NameGLYMA_06G106500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 205aa    MW: 22386.3 Da    PI: 8.2722
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G106500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.21.2e-288961100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk++rrkC+++Cv+apyfp ++p+           +nv kll++l+  +reda++sl+yeAear+rdPvyG+vg+i+ lq++l+ql
  Glyma.06G106500.1.p   8 PCAACKIQRRKCTQECVFAPYFPPDNPQ-----------RNVAKLLNELNAAQREDAVKSLAYEAEARLRDPVYGCVGLISILQHRLKQL 86 
                          7*************************87...........599************************************************ PP

               DUF260  91 kaelallkee 100
                          ++el+++k+e
  Glyma.06G106500.1.p  87 QNELHHAKKE 96 
                          *****99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.927797IPR004883Lateral organ boundaries, LOB
PfamPF031954.8E-28894IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MSSSSNSPCA ACKIQRRKCT QECVFAPYFP PDNPQRNVAK LLNELNAAQR EDAVKSLAYE  60
AEARLRDPVY GCVGLISILQ HRLKQLQNEL HHAKKELASH IGSHTMLPPA PSLLPPEQQP  120
RTFSLFPFKP ASTHQHDLFG FHDDGGASSA SHAGGFNSHL AAVFSPSPAV DHAFSHAPMQ  180
SLTLPHHQHL MRSPMQPKPQ TDPA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006581559.11e-136PREDICTED: LOB domain-containing protein 36-like
SwissprotQ9FKZ32e-52LBD36_ARATH; LOB domain-containing protein 36
TrEMBLA0A0R0JEY41e-149A0A0R0JEY4_SOYBN; Uncharacterized protein
STRINGGLYMA06G11181.11e-136(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23533484
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.12e-53ASYMMETRIC LEAVES 2-like 1